Hi Jon,
I found what teh problem was about half an hour ago.  The issue isn't backuppc 
or rsync it's self.  The problem is that we are running windows X86_64.

Cygwin rsync is a 32-bit application so any writes to system files are 
intercepted by the WOW64 subsystem.  It turns out that backuppc was trying to 
write to c:\windows\system32 and Windows was redirecting these to 
c:\windows\sysWOW64\

Looks like I'll have to go back to SMB for restores until they come up with a 
64-bit version of rsync for windows.

Thanks again for your help

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