Probably start backuppc, because it's not running.

>After upgrading from 3.2.1 to 3.3.0 I get this error when stopping the 
>backuppc service: 
># (root < at > mi-backup)service backuppc stop 
>* Stopping backuppc... No process in pidfile '/var/run/backuppc/BackupPC.pid' 
>found running; none killed. 
>I checked the actual /etc/init.d/backuppc but cant see annything wrong. Any 
>idea how to resolve this?

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