--with-sbindir=/opt/amanda2/sbin \
--with-libexecdir=/opt/amanda2/libexec \
--with-libdir=/opt/amanda2/lib \
--with-mandir=/opt/amanda2/man  \

These four lines are being ignored -- thes options should not include
"with-".  Check the configure --help.

> 164     ./perlib/Amanda

This has to be present for perl to find packages with the "Amanda::" prefix.

> 808     ./share/amanda

What's in here?  I can't tell just from the directory name where it came from.

> 4       ./include/amanda

This is amincludedir, which you can set explicitly if you'd like
(--with-amincludedir).  See configure --help.

> 76      ./var/lib/amanda/example/label-templates
> 124     ./var/lib/amanda/example
> 60      ./var/lib/amanda/template.d
> 188     ./var/lib/amanda

These currently can't be changed (/var/lib/amanda =
$(localstatedir)/amanda.  You could fix that with a patch to
config/amanda/dirs.m4 and example/Makefile.am.

Dustin

-- 
Storage Software Engineer
http://www.zmanda.com